Bioconductor Omics data

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genetics/genomics omics data statistics development R Job

8.3 years ago • updated 8.2 years ago Luo Weijun ★ 1.6k

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pathview pathway analysis visualization web server omics data

8.9 years ago Weijun Luo • 0

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Comment: makeContrastsDream for Interaction by abadgerw • 0

Thank you! I will try this out.

Comment: Merge Replicates vs Mixed Model by abadgerw • 0

Thanks, @gabrielhoffman The data is actually proteomics so it is intensity data which is why I did not use voom but rather ran ebayes wi…

Comment: ANOVA like approach of edgeR by Gordon Smyth 52k

To identify common upregulated or downregulated genes, you would need to test for media condition contrasts for each cell type separately, …

Comment: DESeq2 sizefactors counfounded with biological treatment by Anna • 0

Hi James, Apologies (re: posting in the wrong place). Thank you so much for your response, that was exactly the help I needed. Best, A…

Comment: ANOVA like approach of edgeR by Talip ▴ 10

I am comparing the expression patterns of different tissue cell lines (CellType) under five distinct media conditions (Status). Since the c…

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Comment: makeContrastsDream for Interaction

Answer: ANOVA like approach of edgeR

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